How to match a column from File1 to get its corresponding fasta sequences in File 2?

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May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



File 1 .csv file
Object_ID, Length, Assignment
NODE_142_length_92872_cov_11.2497,92872,2005469
NODE_405_length_50717_cov_10.7964,50717,82654
NODE_775_length_33402_cov_18.9306,33402,1147
NODE_1008_length_27630_cov_17.7829,27630,1184



File 2 fasta.file




NODE_1_length_501653_cov_19.284
TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
NODE_142_length_92872_cov_11.2497
ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




OUTPUT FILE




NODE_142_length_92872_cov_11.2497
ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




Thank you






shell-script text-processing awk command-line






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    May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



    File 1 .csv file
    Object_ID, Length, Assignment
    NODE_142_length_92872_cov_11.2497,92872,2005469
    NODE_405_length_50717_cov_10.7964,50717,82654
    NODE_775_length_33402_cov_18.9306,33402,1147
    NODE_1008_length_27630_cov_17.7829,27630,1184



    File 2 fasta.file




    NODE_1_length_501653_cov_19.284
    TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
    GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
    NODE_142_length_92872_cov_11.2497
    ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
    TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




    OUTPUT FILE




    NODE_142_length_92872_cov_11.2497
    ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
    TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




    Thank you






    shell-script text-processing awk command-line






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      up vote
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      down vote

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      May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



      File 1 .csv file
      Object_ID, Length, Assignment
      NODE_142_length_92872_cov_11.2497,92872,2005469
      NODE_405_length_50717_cov_10.7964,50717,82654
      NODE_775_length_33402_cov_18.9306,33402,1147
      NODE_1008_length_27630_cov_17.7829,27630,1184



      File 2 fasta.file




      NODE_1_length_501653_cov_19.284
      TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
      GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      OUTPUT FILE




      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      Thank you






      shell-script text-processing awk command-line






      share







      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.











      May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



      File 1 .csv file
      Object_ID, Length, Assignment
      NODE_142_length_92872_cov_11.2497,92872,2005469
      NODE_405_length_50717_cov_10.7964,50717,82654
      NODE_775_length_33402_cov_18.9306,33402,1147
      NODE_1008_length_27630_cov_17.7829,27630,1184



      File 2 fasta.file




      NODE_1_length_501653_cov_19.284
      TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
      GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      OUTPUT FILE




      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      Thank you






      shell-script text-processing awk command-line




      shell-script text-processing awk command-line





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