How to match a column from File1 to get its corresponding fasta sequences in File 2?

The name of the pictureThe name of the pictureThe name of the pictureClash Royale CLAN TAG#URR8PPP











up vote
0
down vote

favorite












May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



File 1 .csv file
Object_ID, Length, Assignment
NODE_142_length_92872_cov_11.2497,92872,2005469
NODE_405_length_50717_cov_10.7964,50717,82654
NODE_775_length_33402_cov_18.9306,33402,1147
NODE_1008_length_27630_cov_17.7829,27630,1184



File 2 fasta.file




NODE_1_length_501653_cov_19.284
TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
NODE_142_length_92872_cov_11.2497
ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




OUTPUT FILE




NODE_142_length_92872_cov_11.2497
ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




Thank you






shell-script text-processing awk command-line






share







New contributor




beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.























    up vote
    0
    down vote

    favorite












    May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



    File 1 .csv file
    Object_ID, Length, Assignment
    NODE_142_length_92872_cov_11.2497,92872,2005469
    NODE_405_length_50717_cov_10.7964,50717,82654
    NODE_775_length_33402_cov_18.9306,33402,1147
    NODE_1008_length_27630_cov_17.7829,27630,1184



    File 2 fasta.file




    NODE_1_length_501653_cov_19.284
    TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
    GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
    NODE_142_length_92872_cov_11.2497
    ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
    TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




    OUTPUT FILE




    NODE_142_length_92872_cov_11.2497
    ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
    TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




    Thank you






    shell-script text-processing awk command-line






    share







    New contributor




    beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
    Check out our Code of Conduct.





















      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



      File 1 .csv file
      Object_ID, Length, Assignment
      NODE_142_length_92872_cov_11.2497,92872,2005469
      NODE_405_length_50717_cov_10.7964,50717,82654
      NODE_775_length_33402_cov_18.9306,33402,1147
      NODE_1008_length_27630_cov_17.7829,27630,1184



      File 2 fasta.file




      NODE_1_length_501653_cov_19.284
      TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
      GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      OUTPUT FILE




      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      Thank you






      shell-script text-processing awk command-line






      share







      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.











      May I kindly ask how to match all values of the first column in File with the line text in File 2 so I can copy the fasta sequences of all Object ID in File 1?



      File 1 .csv file
      Object_ID, Length, Assignment
      NODE_142_length_92872_cov_11.2497,92872,2005469
      NODE_405_length_50717_cov_10.7964,50717,82654
      NODE_775_length_33402_cov_18.9306,33402,1147
      NODE_1008_length_27630_cov_17.7829,27630,1184



      File 2 fasta.file




      NODE_1_length_501653_cov_19.284
      TGGTGTGAGAGGCGCACCTCGCTAACTTTTCAGTTAGCGAGGCCGTCTACTCGATTAGCT
      GTTATGAGCCCGACGAGCTACCAACTGCTCCATCCCGCGATATTGTGATGCAAAGGTAAG
      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      OUTPUT FILE




      NODE_142_length_92872_cov_11.2497
      ATTAACTACTAAGTTACAAATTTTAGTAGCTGTCCAGTTTAAAGGAAGTATTTCATATTT
      TCGCTTACGTTAAATAGGAAAAGCAAGTTCTTTTTTGAGGTACCCAGTGAGTCTGATTTT




      Thank you






      shell-script text-processing awk command-line




      shell-script text-processing awk command-line





      share







      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.










      share







      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.








      share



      share






      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.









      asked 6 mins ago









      beth

      61




      61




      New contributor




      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.





      New contributor





      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.






      beth is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.

























          active

          oldest

          votes











          Your Answer







          StackExchange.ready(function()
          var channelOptions =
          tags: "".split(" "),
          id: "106"
          ;
          initTagRenderer("".split(" "), "".split(" "), channelOptions);

          StackExchange.using("externalEditor", function()
          // Have to fire editor after snippets, if snippets enabled
          if (StackExchange.settings.snippets.snippetsEnabled)
          StackExchange.using("snippets", function()
          createEditor();
          );

          else
          createEditor();

          );

          function createEditor()
          StackExchange.prepareEditor(
          heartbeatType: 'answer',
          convertImagesToLinks: false,
          noModals: false,
          showLowRepImageUploadWarning: true,
          reputationToPostImages: null,
          bindNavPrevention: true,
          postfix: "",
          onDemand: true,
          discardSelector: ".discard-answer"
          ,immediatelyShowMarkdownHelp:true
          );



          );






          beth is a new contributor. Be nice, and check out our Code of Conduct.









           

          draft saved


          draft discarded


















          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2funix.stackexchange.com%2fquestions%2f474735%2fhow-to-match-a-column-from-file1-to-get-its-corresponding-fasta-sequences-in-fil%23new-answer', 'question_page');

          );

          Post as a guest






















          active

          oldest

          votes













          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes








          beth is a new contributor. Be nice, and check out our Code of Conduct.









           

          draft saved


          draft discarded


















          beth is a new contributor. Be nice, and check out our Code of Conduct.












          beth is a new contributor. Be nice, and check out our Code of Conduct.











          beth is a new contributor. Be nice, and check out our Code of Conduct.













           


          draft saved


          draft discarded














          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2funix.stackexchange.com%2fquestions%2f474735%2fhow-to-match-a-column-from-file1-to-get-its-corresponding-fasta-sequences-in-fil%23new-answer', 'question_page');

          );

          Post as a guest
































































          -

          Popular posts from this blog

          How to check contact read email or not when send email to Individual?

          Image
          Clash Royale CLAN TAG #URR8PPP up vote 1 down vote favorite I'm using WordPress 4.9.8, CiviCRM to 5.5.1, I usually send email to contact by Search> Find contacts View contact details Action> Send email Send email ok, Contact received mail ok like picture But status only Email sent though contact read email or not. So, can CiviCRM can change status to Email read when contact read email? wordpress email share | improve this question asked Sep 26 at 0:12 ToanLuong 49 9 add a comment  |  up vote 1 down vote favorite I'm using WordPress 4.9.8, CiviCRM to 5.5.1, I usually send email to contact by Search> Find contacts View contact details Action> Send email Send email ok, Contact received mail ok like picture But status only Email sent though contact read email or not. So, can CiviCRM can change status to Email read when contact read email? wordpress email share | improve this question asked Se
          Read more

          Bahrain

          Image
          For other uses, see Bahrain (disambiguation). Sovereign island state in the Persian Gulf Kingdom of Bahrain مملكة البحرين   (Arabic) Mamlakat al-Baḥrayn Flag Coat of arms Anthem:  نشيد البحرين الوطني Bahrainona Our Bahrain Location of   Bahrain    (circled in red) Capital and largest city Manama 26°13′N 50°35′E  /  26.217°N 50.583°E  / 26.217; 50.583 Official languages Arabic Ethnic groups (2010 [1] ) 50.7% Arab (46% Bahrani, 4.7% other Arabs) 45.5% Asian 1% European 1.2% Others Religion Islam Demonym(s) Bahraini Government Unitary constitutional monarchy • King Hamad bin Isa Al Khalifa • Crown Prince Salman bin Hamad bin Isa Al Khalifa • Prime Minister Khalifa bin Salman Al Khalifa Legislature National Assembly • Upper house Consultative Council • Lower house Council of Representatives Independence • Declared Independence [2] 14 August 1971 • from United Kingdom [1] 15 August 1971 • Admitted to the United Nations 21 September 1971 • Kingdom of Bahrain 14 February 2002
          Read more

          Postfix configuration issue with fips on centos 7; mailgun relay

          Image
          Clash Royale CLAN TAG #URR8PPP up vote 0 down vote favorite I am trying to setup postfix to relay all mail generated on the local machine via SMTP to a mailgun relay. I have used the mailgun relay before with success on an ubuntu server, but I am migrating to a Centos 7 server which I will be running in FIPS mode. There error log is below, slightly sanitized. I have a small enough network that I choose to have each machine reach out to mailgun individually (this the loopback-only, 127.0.0.0/8 restrictions) and no firewall open port allowing smtp in to the machine. I assume the FIPS mode (and with it disabling of MD5) is causing problems, but I don't know how to overcome it or if it is even possible for tls_fprint to use some supported hash such as sha256 or sha512. However, the relay=none is slightly concerning since I have relayhost set, but perhaps that is because the smtp process is failing? Any help would be appreciated! postconf -n: alias_database = hash:/etc/alia
          Read more