Find string in one file and use it on another

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In file 1 I need to find lines that contain string hdu in column 2, and then in file 2 replace the value in the column 2 with value of column 5 from file 1.



file1:



64 ha 1 LIG H64 64 0.000000 12.0100 c 0.637086 12.0100
65 du 1 LIG XX65 65 0.000000 16.0000 o -0.547014 16.0000
66 du 1 LIG XX66 66 0.000000 16.0000 oh -0.611114 16.0000
67 hdu 1 LIG HX67 67 0.000000 1.0080 hc 0.090186 1.0080
68 hdu 1 LIG HX68 68 0.000000 1.0080 hc 0.090186 1.0080


file2:



1LIG H64 64 2.06144000 1.94117000 2.65125000
1LIG XX65 65 2.14737000 1.92392000 2.73722000
1LIG XX66 66 1.98154000 2.05095000 2.64407000
1LIG XX67 67 2.21440000 1.72650000 2.55862000
1LIG XX68 68 2.22046000 1.85502000 2.43909000


In the given case, I need to replace XX67 with HX67, and XX68 with HX68, so that the output is:



1LIG H64 64 2.06144000 1.94117000 2.65125000
1LIG XX65 65 2.14737000 1.92392000 2.73722000
1LIG XX66 66 1.98154000 2.05095000 2.64407000
1LIG HX67 67 2.21440000 1.72650000 2.55862000
1LIG HX68 68 2.22046000 1.85502000 2.43909000


My best guess was command



awk 'FNR==NR && $2=="hdu" x=$1;y=$5 NR!=FNR if ($3==x) $2=y print' file1 file2



but it replaced only last occurrence.






awk






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    In file 1 I need to find lines that contain string hdu in column 2, and then in file 2 replace the value in the column 2 with value of column 5 from file 1.



    file1:



    64 ha 1 LIG H64 64 0.000000 12.0100 c 0.637086 12.0100
    65 du 1 LIG XX65 65 0.000000 16.0000 o -0.547014 16.0000
    66 du 1 LIG XX66 66 0.000000 16.0000 oh -0.611114 16.0000
    67 hdu 1 LIG HX67 67 0.000000 1.0080 hc 0.090186 1.0080
    68 hdu 1 LIG HX68 68 0.000000 1.0080 hc 0.090186 1.0080


    file2:



    1LIG H64 64 2.06144000 1.94117000 2.65125000
    1LIG XX65 65 2.14737000 1.92392000 2.73722000
    1LIG XX66 66 1.98154000 2.05095000 2.64407000
    1LIG XX67 67 2.21440000 1.72650000 2.55862000
    1LIG XX68 68 2.22046000 1.85502000 2.43909000


    In the given case, I need to replace XX67 with HX67, and XX68 with HX68, so that the output is:



    1LIG H64 64 2.06144000 1.94117000 2.65125000
    1LIG XX65 65 2.14737000 1.92392000 2.73722000
    1LIG XX66 66 1.98154000 2.05095000 2.64407000
    1LIG HX67 67 2.21440000 1.72650000 2.55862000
    1LIG HX68 68 2.22046000 1.85502000 2.43909000


    My best guess was command



    awk 'FNR==NR && $2=="hdu" x=$1;y=$5 NR!=FNR if ($3==x) $2=y print' file1 file2



    but it replaced only last occurrence.






    awk






    share







    New contributor




    user318543 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
    Check out our Code of Conduct.





















      up vote
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      up vote
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      In file 1 I need to find lines that contain string hdu in column 2, and then in file 2 replace the value in the column 2 with value of column 5 from file 1.



      file1:



      64 ha 1 LIG H64 64 0.000000 12.0100 c 0.637086 12.0100
      65 du 1 LIG XX65 65 0.000000 16.0000 o -0.547014 16.0000
      66 du 1 LIG XX66 66 0.000000 16.0000 oh -0.611114 16.0000
      67 hdu 1 LIG HX67 67 0.000000 1.0080 hc 0.090186 1.0080
      68 hdu 1 LIG HX68 68 0.000000 1.0080 hc 0.090186 1.0080


      file2:



      1LIG H64 64 2.06144000 1.94117000 2.65125000
      1LIG XX65 65 2.14737000 1.92392000 2.73722000
      1LIG XX66 66 1.98154000 2.05095000 2.64407000
      1LIG XX67 67 2.21440000 1.72650000 2.55862000
      1LIG XX68 68 2.22046000 1.85502000 2.43909000


      In the given case, I need to replace XX67 with HX67, and XX68 with HX68, so that the output is:



      1LIG H64 64 2.06144000 1.94117000 2.65125000
      1LIG XX65 65 2.14737000 1.92392000 2.73722000
      1LIG XX66 66 1.98154000 2.05095000 2.64407000
      1LIG HX67 67 2.21440000 1.72650000 2.55862000
      1LIG HX68 68 2.22046000 1.85502000 2.43909000


      My best guess was command



      awk 'FNR==NR && $2=="hdu" x=$1;y=$5 NR!=FNR if ($3==x) $2=y print' file1 file2



      but it replaced only last occurrence.






      awk






      share







      New contributor




      user318543 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.











      In file 1 I need to find lines that contain string hdu in column 2, and then in file 2 replace the value in the column 2 with value of column 5 from file 1.



      file1:



      64 ha 1 LIG H64 64 0.000000 12.0100 c 0.637086 12.0100
      65 du 1 LIG XX65 65 0.000000 16.0000 o -0.547014 16.0000
      66 du 1 LIG XX66 66 0.000000 16.0000 oh -0.611114 16.0000
      67 hdu 1 LIG HX67 67 0.000000 1.0080 hc 0.090186 1.0080
      68 hdu 1 LIG HX68 68 0.000000 1.0080 hc 0.090186 1.0080


      file2:



      1LIG H64 64 2.06144000 1.94117000 2.65125000
      1LIG XX65 65 2.14737000 1.92392000 2.73722000
      1LIG XX66 66 1.98154000 2.05095000 2.64407000
      1LIG XX67 67 2.21440000 1.72650000 2.55862000
      1LIG XX68 68 2.22046000 1.85502000 2.43909000


      In the given case, I need to replace XX67 with HX67, and XX68 with HX68, so that the output is:



      1LIG H64 64 2.06144000 1.94117000 2.65125000
      1LIG XX65 65 2.14737000 1.92392000 2.73722000
      1LIG XX66 66 1.98154000 2.05095000 2.64407000
      1LIG HX67 67 2.21440000 1.72650000 2.55862000
      1LIG HX68 68 2.22046000 1.85502000 2.43909000


      My best guess was command



      awk 'FNR==NR && $2=="hdu" x=$1;y=$5 NR!=FNR if ($3==x) $2=y print' file1 file2



      but it replaced only last occurrence.






      awk




      awk





      share







      New contributor




      user318543 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.










      share







      New contributor




      user318543 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.








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      user318543 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
      Check out our Code of Conduct.









      asked 1 min ago









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      Check out our Code of Conduct.






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      Check out our Code of Conduct.

























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