tail: error writing 'standard output': Broken pipe

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I tried to use some scripts which use tail commands on Debian stretch but I got tail: error writing 'standard output': Broken pipe.



Does Debian handle tail and pipe syntax differently?



Thank you in advance,






debian pipe tail







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  • 1




    You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
    – mosvy
    6 hours ago











  • I checked the code but it appears there no SIGPIPE.
    – user977828
    6 hours ago










  • Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
    – Jeff Schaller
    5 hours ago














up vote
0
down vote

favorite












I tried to use some scripts which use tail commands on Debian stretch but I got tail: error writing 'standard output': Broken pipe.



Does Debian handle tail and pipe syntax differently?



Thank you in advance,






debian pipe tail







share|improve this question

















  • 1




    You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
    – mosvy
    6 hours ago











  • I checked the code but it appears there no SIGPIPE.
    – user977828
    6 hours ago










  • Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
    – Jeff Schaller
    5 hours ago












up vote
0
down vote

favorite









up vote
0
down vote

favorite











I tried to use some scripts which use tail commands on Debian stretch but I got tail: error writing 'standard output': Broken pipe.



Does Debian handle tail and pipe syntax differently?



Thank you in advance,






debian pipe tail







share|improve this question













I tried to use some scripts which use tail commands on Debian stretch but I got tail: error writing 'standard output': Broken pipe.



Does Debian handle tail and pipe syntax differently?



Thank you in advance,






debian pipe tail




debian pipe tail






share|improve this question













share|improve this question











share|improve this question




share|improve this question










asked 7 hours ago









user977828

3451516




3451516







  • 1




    You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
    – mosvy
    6 hours ago











  • I checked the code but it appears there no SIGPIPE.
    – user977828
    6 hours ago










  • Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
    – Jeff Schaller
    5 hours ago












  • 1




    You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
    – mosvy
    6 hours ago











  • I checked the code but it appears there no SIGPIPE.
    – user977828
    6 hours ago










  • Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
    – Jeff Schaller
    5 hours ago







1




1




You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
– mosvy
6 hours ago





You probably have the SIGPIPE signal handler set to 'ignore' in your script or in another program calling it (eg. with trap '' PIPE). Don't do that.
– mosvy
6 hours ago













I checked the code but it appears there no SIGPIPE.
– user977828
6 hours ago




I checked the code but it appears there no SIGPIPE.
– user977828
6 hours ago












Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
– Jeff Schaller
5 hours ago




Your code, for example tail -c +$index[$contig] $fasta | awk '$0~/>/exit1' specifically breaks the pipe in certain situations -- just to make that clear. If you can't control the SIGPIPE handling, then you may want to rework the code so that it tests for the />/ condition before calling the pipeline.
– Jeff Schaller
5 hours ago















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