mjhjmtu

Has anyone experienced having their plot labels cropped in knitted PDF's in Linux? This does not happen in my Windows machine.

Here is a minimal r-markdown example to replicate this problem.

---
output: 
 pdf_document:
 keep_tex: true
---

---
r setup, include=FALSE
knitr::opts_chunk$set(echo = TRUE)
---

---
r pressure, echo=FALSE
plot(pressure)
---

Here is the output.

I have submitted this as a bug report here.

sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: elementary OS 0.4.1 Loki

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 
 [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 
 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C 
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C 

attached base packages:
[1] stats grDevices utils datasets graphics methods base 

loaded via a namespace (and not attached):
 [1] tseries_0.10-44 httr_1.3.1 tufte_0.3 
 [4] tidyr_0.8.0 jsonlite_1.5 uroot_2.0-9 
 [7] modelr_0.1.1 assertthat_0.2.0 TTR_0.23-3 
[10] selectr_0.4-1 cellranger_1.1.0 yaml_2.1.18 
[13] progress_1.2.0 pillar_1.2.2 backports_1.1.2 
[16] lattice_0.20-35 glue_1.2.0 quadprog_1.5-5 
[19] digest_0.6.15 rvest_0.3.2 colorspace_1.3-2 
[22] htmltools_0.3.6 plyr_1.8.4 psych_1.8.3.3 
[25] timeDate_3043.102 pkgconfig_2.0.1 broom_0.4.4 
[28] haven_1.1.1 purrr_0.2.4 scales_0.5.0.9000 
[31] git2r_0.21.0 tibble_1.4.2 ggplot2_2.2.1.9000 
[34] withr_2.1.2 urca_1.3-0 nnet_7.3-12 
[37] ansistrings_1.0.0.9000 lazyeval_0.2.1 cli_1.0.0.9002 
[40] quantmod_0.4-13 mnormt_1.5-5 magrittr_1.5 
[43] crayon_1.3.4 readxl_1.1.0 memoise_1.1.0 
[46] evaluate_0.10.1 nlme_3.1-131.1 forcats_0.3.0 
[49] xts_0.10-2 xml2_1.2.0 foreign_0.8-69 
[52] rsconnect_0.8.8 tools_3.4.4 prettyunits_1.0.2 
[55] hms_0.4.2 stringr_1.3.0 munsell_0.4.3 
[58] bindrcpp_0.2.2 compiler_3.4.4 rlang_0.2.0.9001 
[61] grid_3.4.4 rstudioapi_0.7 labeling_0.3 
[64] rmarkdown_1.9 gtable_0.2.0 fracdiff_1.4-2 
[67] curl_3.2 reshape2_1.4.3 R6_2.2.2 
[70] zoo_1.8-1 lubridate_1.7.4 knitr_1.20 
[73] dplyr_0.7.4 utf8_1.1.3 bindr_0.1.1 
[76] rprojroot_1.3-2 readr_1.1.1 stringi_1.1.7 
[79] parallel_3.4.4 Rcpp_0.12.16 lmtest_0.9-36