Run command for every 10 folders unserialized
Clash Royale CLAN TAG#URR8PPP
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i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
add a comment |Â
up vote
0
down vote
favorite
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
add a comment |Â
up vote
0
down vote
favorite
up vote
0
down vote
favorite
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
bash for
asked 36 mins ago
Relyativist
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