Curve fitting with variable number of Gaussian curve

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up vote
1
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I have the data which appears like
ListPlot of the data



And I decided to use three Gaussian curves to fit it.



(This code allows me to manipulate all three curves and put in best guesses for peak positions. Using these guesses, Mathematica will find a set of three gaussian curves that are the closest match if one clicks click find nearest solution.)



[Lambda]min=340;
[Lambda]max=380;
model = height + amp1*Exp[-(x - x01)^2/sigma1^2] + amp2*Exp[-(x - x02)^2/sigma2^2] + amp3*Exp[-(x - x03)^2/sigma3^2]

findBestFitFromValues[amp1guess_, x01guess_, sigma1guess_,
amp2guess_, x02guess_, sigma2guess_, amp3guess_, x03guess_,
sigma3guess_, heightguess_] :=
FindFit[
rowData(*change this*), model, sigma1 > 0, sigma2 > 0, sigma3 > 0, amp1,
amp1guess, x01, x01guess, sigma1, sigma1guess, amp2,
amp2guess, x02, x02guess, sigma2, sigma2guess, amp3,
amp3guess, x03, x03guess, sigma3, sigma3guess, height,
heightguess, x];
With[

localModel =
model /.

amp1 -> amp1Var, amp2 -> amp2Var, amp3 -> amp3Var,
sigma1 -> sigma1Var, sigma2 -> sigma2Var, sigma3 -> sigma3Var,
x01 -> x01Var, x02 -> x02Var, x03 -> x03Var,
height -> heightVar
,
Manipulate[
Column[
Style["Match to Data", 12, Bold],
Show[rowDataPlot(*change this*),
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black] ,Graphics[

Orange,Line[x01Var,0, x01Var,500],
Blue,Line[x02Var,0, x02Var,500],
Red,Line[x03Var,0, x03Var,500]

]],
Style["Chosen Curve", 12, Bold],
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black, ImageSize -> 400]
],
Delimiter, Style["Peak 1", 12, Bold],
amp1Var, 2000, Style["Amplitude 1", Orange], 0, 40000,
x01Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 1/5,
Style["center 1", Orange], 1.95, 3.6,
sigma1Var, 0.01, Style["sigma 1", Orange], 0.01, 0.3,
Delimiter, Style["Peak 2", 12, Bold],
amp2Var, 1660, Style["Amplitude 2", Blue], 0, 15000,
x02Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 2/5,
Style["center 2", Blue], 1.95, 3.6,
sigma2Var, 0.01, Style["sigma 2", Blue], 0.01, 0.3,
Delimiter, Style["Peak 3", 12, Bold],
amp3Var, 1445, Style["Amplitude 3", Red], 0, 10000,
x03Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 4/5,
Style["center 3", Red], 1.95, 3.6,
sigma3Var, 0.01, Style["sigma 3", Red], 0.01, 0.3,
Delimiter, Style["Height", 12, Bold],
heightVar, 15, Style["Height"], 0, 1000,
Delimiter,
Control[Button["click find nearest solution",
vals =
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var, amp3Var,
x03Var, sigma3Var,
heightVar = amp1, x01, sigma1, amp2, x02, sigma2, amp3, x03,
sigma3, height /.
findBestFitFromValues[
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var,
amp3Var, x03Var, sigma3Var, heightVar]]],
SaveDefinitions -> True
]
]


If I want to fit another data with four or more Gaussian curves, how can I re-write my code to obtain the curve fitting that I can specify the number of Gaussian curves? Not the above one where I constrain the number to be three.



EDIT1



I mean, if I specify the number n to be 2, then we can have a two-Gaussian-curve fitting panel,
two-Gaussian-curve fitting
if I specify the number n to be 3, then we can have a three-Gaussian-curve fitting panel,
enter image description here










share|improve this question



















  • 1




    Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
    – JimB
    Aug 15 at 6:59











  • Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
    – JimB
    Aug 18 at 14:57










  • It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
    – chika
    Aug 18 at 15:22










  • Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
    – JimB
    Aug 20 at 3:42














up vote
1
down vote

favorite












I have the data which appears like
ListPlot of the data



And I decided to use three Gaussian curves to fit it.



(This code allows me to manipulate all three curves and put in best guesses for peak positions. Using these guesses, Mathematica will find a set of three gaussian curves that are the closest match if one clicks click find nearest solution.)



[Lambda]min=340;
[Lambda]max=380;
model = height + amp1*Exp[-(x - x01)^2/sigma1^2] + amp2*Exp[-(x - x02)^2/sigma2^2] + amp3*Exp[-(x - x03)^2/sigma3^2]

findBestFitFromValues[amp1guess_, x01guess_, sigma1guess_,
amp2guess_, x02guess_, sigma2guess_, amp3guess_, x03guess_,
sigma3guess_, heightguess_] :=
FindFit[
rowData(*change this*), model, sigma1 > 0, sigma2 > 0, sigma3 > 0, amp1,
amp1guess, x01, x01guess, sigma1, sigma1guess, amp2,
amp2guess, x02, x02guess, sigma2, sigma2guess, amp3,
amp3guess, x03, x03guess, sigma3, sigma3guess, height,
heightguess, x];
With[

localModel =
model /.

amp1 -> amp1Var, amp2 -> amp2Var, amp3 -> amp3Var,
sigma1 -> sigma1Var, sigma2 -> sigma2Var, sigma3 -> sigma3Var,
x01 -> x01Var, x02 -> x02Var, x03 -> x03Var,
height -> heightVar
,
Manipulate[
Column[
Style["Match to Data", 12, Bold],
Show[rowDataPlot(*change this*),
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black] ,Graphics[

Orange,Line[x01Var,0, x01Var,500],
Blue,Line[x02Var,0, x02Var,500],
Red,Line[x03Var,0, x03Var,500]

]],
Style["Chosen Curve", 12, Bold],
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black, ImageSize -> 400]
],
Delimiter, Style["Peak 1", 12, Bold],
amp1Var, 2000, Style["Amplitude 1", Orange], 0, 40000,
x01Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 1/5,
Style["center 1", Orange], 1.95, 3.6,
sigma1Var, 0.01, Style["sigma 1", Orange], 0.01, 0.3,
Delimiter, Style["Peak 2", 12, Bold],
amp2Var, 1660, Style["Amplitude 2", Blue], 0, 15000,
x02Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 2/5,
Style["center 2", Blue], 1.95, 3.6,
sigma2Var, 0.01, Style["sigma 2", Blue], 0.01, 0.3,
Delimiter, Style["Peak 3", 12, Bold],
amp3Var, 1445, Style["Amplitude 3", Red], 0, 10000,
x03Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 4/5,
Style["center 3", Red], 1.95, 3.6,
sigma3Var, 0.01, Style["sigma 3", Red], 0.01, 0.3,
Delimiter, Style["Height", 12, Bold],
heightVar, 15, Style["Height"], 0, 1000,
Delimiter,
Control[Button["click find nearest solution",
vals =
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var, amp3Var,
x03Var, sigma3Var,
heightVar = amp1, x01, sigma1, amp2, x02, sigma2, amp3, x03,
sigma3, height /.
findBestFitFromValues[
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var,
amp3Var, x03Var, sigma3Var, heightVar]]],
SaveDefinitions -> True
]
]


If I want to fit another data with four or more Gaussian curves, how can I re-write my code to obtain the curve fitting that I can specify the number of Gaussian curves? Not the above one where I constrain the number to be three.



EDIT1



I mean, if I specify the number n to be 2, then we can have a two-Gaussian-curve fitting panel,
two-Gaussian-curve fitting
if I specify the number n to be 3, then we can have a three-Gaussian-curve fitting panel,
enter image description here










share|improve this question



















  • 1




    Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
    – JimB
    Aug 15 at 6:59











  • Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
    – JimB
    Aug 18 at 14:57










  • It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
    – chika
    Aug 18 at 15:22










  • Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
    – JimB
    Aug 20 at 3:42












up vote
1
down vote

favorite









up vote
1
down vote

favorite











I have the data which appears like
ListPlot of the data



And I decided to use three Gaussian curves to fit it.



(This code allows me to manipulate all three curves and put in best guesses for peak positions. Using these guesses, Mathematica will find a set of three gaussian curves that are the closest match if one clicks click find nearest solution.)



[Lambda]min=340;
[Lambda]max=380;
model = height + amp1*Exp[-(x - x01)^2/sigma1^2] + amp2*Exp[-(x - x02)^2/sigma2^2] + amp3*Exp[-(x - x03)^2/sigma3^2]

findBestFitFromValues[amp1guess_, x01guess_, sigma1guess_,
amp2guess_, x02guess_, sigma2guess_, amp3guess_, x03guess_,
sigma3guess_, heightguess_] :=
FindFit[
rowData(*change this*), model, sigma1 > 0, sigma2 > 0, sigma3 > 0, amp1,
amp1guess, x01, x01guess, sigma1, sigma1guess, amp2,
amp2guess, x02, x02guess, sigma2, sigma2guess, amp3,
amp3guess, x03, x03guess, sigma3, sigma3guess, height,
heightguess, x];
With[

localModel =
model /.

amp1 -> amp1Var, amp2 -> amp2Var, amp3 -> amp3Var,
sigma1 -> sigma1Var, sigma2 -> sigma2Var, sigma3 -> sigma3Var,
x01 -> x01Var, x02 -> x02Var, x03 -> x03Var,
height -> heightVar
,
Manipulate[
Column[
Style["Match to Data", 12, Bold],
Show[rowDataPlot(*change this*),
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black] ,Graphics[

Orange,Line[x01Var,0, x01Var,500],
Blue,Line[x02Var,0, x02Var,500],
Red,Line[x03Var,0, x03Var,500]

]],
Style["Chosen Curve", 12, Bold],
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black, ImageSize -> 400]
],
Delimiter, Style["Peak 1", 12, Bold],
amp1Var, 2000, Style["Amplitude 1", Orange], 0, 40000,
x01Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 1/5,
Style["center 1", Orange], 1.95, 3.6,
sigma1Var, 0.01, Style["sigma 1", Orange], 0.01, 0.3,
Delimiter, Style["Peak 2", 12, Bold],
amp2Var, 1660, Style["Amplitude 2", Blue], 0, 15000,
x02Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 2/5,
Style["center 2", Blue], 1.95, 3.6,
sigma2Var, 0.01, Style["sigma 2", Blue], 0.01, 0.3,
Delimiter, Style["Peak 3", 12, Bold],
amp3Var, 1445, Style["Amplitude 3", Red], 0, 10000,
x03Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 4/5,
Style["center 3", Red], 1.95, 3.6,
sigma3Var, 0.01, Style["sigma 3", Red], 0.01, 0.3,
Delimiter, Style["Height", 12, Bold],
heightVar, 15, Style["Height"], 0, 1000,
Delimiter,
Control[Button["click find nearest solution",
vals =
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var, amp3Var,
x03Var, sigma3Var,
heightVar = amp1, x01, sigma1, amp2, x02, sigma2, amp3, x03,
sigma3, height /.
findBestFitFromValues[
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var,
amp3Var, x03Var, sigma3Var, heightVar]]],
SaveDefinitions -> True
]
]


If I want to fit another data with four or more Gaussian curves, how can I re-write my code to obtain the curve fitting that I can specify the number of Gaussian curves? Not the above one where I constrain the number to be three.



EDIT1



I mean, if I specify the number n to be 2, then we can have a two-Gaussian-curve fitting panel,
two-Gaussian-curve fitting
if I specify the number n to be 3, then we can have a three-Gaussian-curve fitting panel,
enter image description here










share|improve this question















I have the data which appears like
ListPlot of the data



And I decided to use three Gaussian curves to fit it.



(This code allows me to manipulate all three curves and put in best guesses for peak positions. Using these guesses, Mathematica will find a set of three gaussian curves that are the closest match if one clicks click find nearest solution.)



[Lambda]min=340;
[Lambda]max=380;
model = height + amp1*Exp[-(x - x01)^2/sigma1^2] + amp2*Exp[-(x - x02)^2/sigma2^2] + amp3*Exp[-(x - x03)^2/sigma3^2]

findBestFitFromValues[amp1guess_, x01guess_, sigma1guess_,
amp2guess_, x02guess_, sigma2guess_, amp3guess_, x03guess_,
sigma3guess_, heightguess_] :=
FindFit[
rowData(*change this*), model, sigma1 > 0, sigma2 > 0, sigma3 > 0, amp1,
amp1guess, x01, x01guess, sigma1, sigma1guess, amp2,
amp2guess, x02, x02guess, sigma2, sigma2guess, amp3,
amp3guess, x03, x03guess, sigma3, sigma3guess, height,
heightguess, x];
With[

localModel =
model /.

amp1 -> amp1Var, amp2 -> amp2Var, amp3 -> amp3Var,
sigma1 -> sigma1Var, sigma2 -> sigma2Var, sigma3 -> sigma3Var,
x01 -> x01Var, x02 -> x02Var, x03 -> x03Var,
height -> heightVar
,
Manipulate[
Column[
Style["Match to Data", 12, Bold],
Show[rowDataPlot(*change this*),
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black] ,Graphics[

Orange,Line[x01Var,0, x01Var,500],
Blue,Line[x02Var,0, x02Var,500],
Red,Line[x03Var,0, x03Var,500]

]],
Style["Chosen Curve", 12, Bold],
Plot[localModel, x, 1240/[Lambda]max, 1240/[Lambda]min,
PlotRange -> All, PlotStyle -> Black, ImageSize -> 400]
],
Delimiter, Style["Peak 1", 12, Bold],
amp1Var, 2000, Style["Amplitude 1", Orange], 0, 40000,
x01Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 1/5,
Style["center 1", Orange], 1.95, 3.6,
sigma1Var, 0.01, Style["sigma 1", Orange], 0.01, 0.3,
Delimiter, Style["Peak 2", 12, Bold],
amp2Var, 1660, Style["Amplitude 2", Blue], 0, 15000,
x02Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 2/5,
Style["center 2", Blue], 1.95, 3.6,
sigma2Var, 0.01, Style["sigma 2", Blue], 0.01, 0.3,
Delimiter, Style["Peak 3", 12, Bold],
amp3Var, 1445, Style["Amplitude 3", Red], 0, 10000,
x03Var,
1240/[Lambda]min - (1240/[Lambda]min - 1240/[Lambda]max) 4/5,
Style["center 3", Red], 1.95, 3.6,
sigma3Var, 0.01, Style["sigma 3", Red], 0.01, 0.3,
Delimiter, Style["Height", 12, Bold],
heightVar, 15, Style["Height"], 0, 1000,
Delimiter,
Control[Button["click find nearest solution",
vals =
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var, amp3Var,
x03Var, sigma3Var,
heightVar = amp1, x01, sigma1, amp2, x02, sigma2, amp3, x03,
sigma3, height /.
findBestFitFromValues[
amp1Var, x01Var, sigma1Var, amp2Var, x02Var, sigma2Var,
amp3Var, x03Var, sigma3Var, heightVar]]],
SaveDefinitions -> True
]
]


If I want to fit another data with four or more Gaussian curves, how can I re-write my code to obtain the curve fitting that I can specify the number of Gaussian curves? Not the above one where I constrain the number to be three.



EDIT1



I mean, if I specify the number n to be 2, then we can have a two-Gaussian-curve fitting panel,
two-Gaussian-curve fitting
if I specify the number n to be 3, then we can have a three-Gaussian-curve fitting panel,
enter image description here







fitting






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Aug 18 at 13:02

























asked Aug 15 at 3:00









chika

1463




1463







  • 1




    Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
    – JimB
    Aug 15 at 6:59











  • Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
    – JimB
    Aug 18 at 14:57










  • It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
    – chika
    Aug 18 at 15:22










  • Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
    – JimB
    Aug 20 at 3:42












  • 1




    Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
    – JimB
    Aug 15 at 6:59











  • Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
    – JimB
    Aug 18 at 14:57










  • It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
    – chika
    Aug 18 at 15:22










  • Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
    – JimB
    Aug 20 at 3:42







1




1




Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
– JimB
Aug 15 at 6:59





Unless you end up with a good/adequate fit and need to be able to reproduce the curve outside of Mathematica, you should consider the more stable and flexible Quantile Regression (@AntonAntonov mathematicaforprediction.wordpress.com/2013/12/23/…).
– JimB
Aug 15 at 6:59













Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
– JimB
Aug 18 at 14:57




Other than this fitting process being computationally interesting, is there any underlying process where the Gaussian curves have some physical meaning? I'm essentially repeating my above comment as there a plenty of other (and more computationally stable) ways to "describe" the data as opposed to "explaining" the data.
– JimB
Aug 18 at 14:57












It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
– chika
Aug 18 at 15:22




It is a light emission spectrum, not a statistical data. And the peaks are temperature-dependent. Therefore I am interested in the change of each "Gaussian peak" as the temperature varies.
– chika
Aug 18 at 15:22












Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
– JimB
Aug 20 at 3:42




Rather than using triplets of sliders, how about using pairs of Locator 's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowed.
– JimB
Aug 20 at 3:42










2 Answers
2






active

oldest

votes

















up vote
3
down vote













You can use the PDF of MixtureDistribution of NormalDistributions to specify your model:



ClearAll[model]
model[n_Integer] := Module[m = Array[μ, n], s = Array[σ, n]/Sqrt[2], w = Array[ω, n],
ω[0] + FullSimplify[Sqrt[2 π]Total[w s]
PDF[MixtureDistribution[w s, NormalDistribution @@@ Transpose[m, s]], x]]]


Examples:



model[3] // TeXForm



$omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
(2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (0)$




With the identification ω[0] = height, ω[1] = amp1, ω[2] = amp2,ω[3] = amp3, μ[i] = x0i and σ[i] = sigmai, this is the same as OP's model.



model[4] // TeXForm



$omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
(2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (4) e^-frac(x-mu (4))^2sigma
(4)^2+omega (0)$







share|improve this answer




















  • Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
    – Kuba♦
    Aug 15 at 6:06










  • Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
    – kglr
    Aug 15 at 6:33










  • @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
    – chika
    Aug 18 at 13:01

















up vote
0
down vote













This is an extended comment. (Well, two comments.)



(1) @Silvia 's and @rherman 's code (and code from any other expert programmer) requires good starting values. That's just a fact of estimating curves.



(2) Rather than using triplets of sliders, how about using pairs of Locator's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowded (i.e., without any triplets of sliders). Here's a crude example:



Manipulate[
(* If no change in the mean/height locator, then update the standard deviation *)
If[μ0 == p[[1]], σ = Abs[p2[[1]] - p[[1]]]];

(* Update standard deviation locator *)
p2 = p[[1]] + σ, p[[2]] Exp[-1/2];

(* Record previous mean: this is so you can tell which locator was most recently moved *)
μ0 = p[[1]];

(* Plot associated Gaussian-shaped curve *)
Plot[p[[2]] Exp[-(x - p[[1]])^2/(2 σ^2)], x, -5, 5,
PlotRange -> All, 0, 5],

p, 0, 0.4, Locator,
p2, 1, 0.4 Exp[-1/2], Locator,
TrackedSymbols -> p, p2,
Initialization :> (μ0 = 0; σ = 1)]


Gaussian curve with locators






share|improve this answer




















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    2 Answers
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    2 Answers
    2






    active

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    active

    oldest

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    up vote
    3
    down vote













    You can use the PDF of MixtureDistribution of NormalDistributions to specify your model:



    ClearAll[model]
    model[n_Integer] := Module[m = Array[μ, n], s = Array[σ, n]/Sqrt[2], w = Array[ω, n],
    ω[0] + FullSimplify[Sqrt[2 π]Total[w s]
    PDF[MixtureDistribution[w s, NormalDistribution @@@ Transpose[m, s]], x]]]


    Examples:



    model[3] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (0)$




    With the identification ω[0] = height, ω[1] = amp1, ω[2] = amp2,ω[3] = amp3, μ[i] = x0i and σ[i] = sigmai, this is the same as OP's model.



    model[4] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (4) e^-frac(x-mu (4))^2sigma
    (4)^2+omega (0)$







    share|improve this answer




















    • Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
      – Kuba♦
      Aug 15 at 6:06










    • Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
      – kglr
      Aug 15 at 6:33










    • @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
      – chika
      Aug 18 at 13:01














    up vote
    3
    down vote













    You can use the PDF of MixtureDistribution of NormalDistributions to specify your model:



    ClearAll[model]
    model[n_Integer] := Module[m = Array[μ, n], s = Array[σ, n]/Sqrt[2], w = Array[ω, n],
    ω[0] + FullSimplify[Sqrt[2 π]Total[w s]
    PDF[MixtureDistribution[w s, NormalDistribution @@@ Transpose[m, s]], x]]]


    Examples:



    model[3] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (0)$




    With the identification ω[0] = height, ω[1] = amp1, ω[2] = amp2,ω[3] = amp3, μ[i] = x0i and σ[i] = sigmai, this is the same as OP's model.



    model[4] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (4) e^-frac(x-mu (4))^2sigma
    (4)^2+omega (0)$







    share|improve this answer




















    • Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
      – Kuba♦
      Aug 15 at 6:06










    • Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
      – kglr
      Aug 15 at 6:33










    • @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
      – chika
      Aug 18 at 13:01












    up vote
    3
    down vote










    up vote
    3
    down vote









    You can use the PDF of MixtureDistribution of NormalDistributions to specify your model:



    ClearAll[model]
    model[n_Integer] := Module[m = Array[μ, n], s = Array[σ, n]/Sqrt[2], w = Array[ω, n],
    ω[0] + FullSimplify[Sqrt[2 π]Total[w s]
    PDF[MixtureDistribution[w s, NormalDistribution @@@ Transpose[m, s]], x]]]


    Examples:



    model[3] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (0)$




    With the identification ω[0] = height, ω[1] = amp1, ω[2] = amp2,ω[3] = amp3, μ[i] = x0i and σ[i] = sigmai, this is the same as OP's model.



    model[4] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (4) e^-frac(x-mu (4))^2sigma
    (4)^2+omega (0)$







    share|improve this answer












    You can use the PDF of MixtureDistribution of NormalDistributions to specify your model:



    ClearAll[model]
    model[n_Integer] := Module[m = Array[μ, n], s = Array[σ, n]/Sqrt[2], w = Array[ω, n],
    ω[0] + FullSimplify[Sqrt[2 π]Total[w s]
    PDF[MixtureDistribution[w s, NormalDistribution @@@ Transpose[m, s]], x]]]


    Examples:



    model[3] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (0)$




    With the identification ω[0] = height, ω[1] = amp1, ω[2] = amp2,ω[3] = amp3, μ[i] = x0i and σ[i] = sigmai, this is the same as OP's model.



    model[4] // TeXForm



    $omega (1) e^-frac(x-mu (1))^2sigma (1)^2+omega (2) e^-frac(x-mu (2))^2sigma
    (2)^2+omega (3) e^-frac(x-mu (3))^2sigma (3)^2+omega (4) e^-frac(x-mu (4))^2sigma
    (4)^2+omega (0)$








    share|improve this answer












    share|improve this answer



    share|improve this answer










    answered Aug 15 at 5:41









    kglr

    160k8184384




    160k8184384











    • Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
      – Kuba♦
      Aug 15 at 6:06










    • Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
      – kglr
      Aug 15 at 6:33










    • @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
      – chika
      Aug 18 at 13:01
















    • Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
      – Kuba♦
      Aug 15 at 6:06










    • Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
      – kglr
      Aug 15 at 6:33










    • @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
      – chika
      Aug 18 at 13:01















    Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
    – Kuba♦
    Aug 15 at 6:06




    Sorry, can't focus now, is this topic narrow enough to deserve a separate q/a? I was thinking about that: mathematica.stackexchange.com/q/26336/5478
    – Kuba♦
    Aug 15 at 6:06












    Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
    – kglr
    Aug 15 at 6:33




    Kuba, this seems to be more specific than the linked one. I took the question to be how to generalize the OP's manually coded 4-term model. Silvia's general answer in the linked q/a does solve this particular case too. Perhaps @chika can clarify whether or not this is a duplicate, and, if not, why.
    – kglr
    Aug 15 at 6:33












    @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
    – chika
    Aug 18 at 13:01




    @Kuba Silvia's code and rhermans's code (in mathematica.stackexchange.com/questions/94154/…) can specify the number of Gaussian curves, but sometimes produce unwanted result or fail to converge. My code allows user to input initial values to make a good fitting result, but I don't know how to generalize my code into n Gaussian curves.
    – chika
    Aug 18 at 13:01










    up vote
    0
    down vote













    This is an extended comment. (Well, two comments.)



    (1) @Silvia 's and @rherman 's code (and code from any other expert programmer) requires good starting values. That's just a fact of estimating curves.



    (2) Rather than using triplets of sliders, how about using pairs of Locator's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowded (i.e., without any triplets of sliders). Here's a crude example:



    Manipulate[
    (* If no change in the mean/height locator, then update the standard deviation *)
    If[μ0 == p[[1]], σ = Abs[p2[[1]] - p[[1]]]];

    (* Update standard deviation locator *)
    p2 = p[[1]] + σ, p[[2]] Exp[-1/2];

    (* Record previous mean: this is so you can tell which locator was most recently moved *)
    μ0 = p[[1]];

    (* Plot associated Gaussian-shaped curve *)
    Plot[p[[2]] Exp[-(x - p[[1]])^2/(2 σ^2)], x, -5, 5,
    PlotRange -> All, 0, 5],

    p, 0, 0.4, Locator,
    p2, 1, 0.4 Exp[-1/2], Locator,
    TrackedSymbols -> p, p2,
    Initialization :> (μ0 = 0; σ = 1)]


    Gaussian curve with locators






    share|improve this answer
























      up vote
      0
      down vote













      This is an extended comment. (Well, two comments.)



      (1) @Silvia 's and @rherman 's code (and code from any other expert programmer) requires good starting values. That's just a fact of estimating curves.



      (2) Rather than using triplets of sliders, how about using pairs of Locator's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowded (i.e., without any triplets of sliders). Here's a crude example:



      Manipulate[
      (* If no change in the mean/height locator, then update the standard deviation *)
      If[μ0 == p[[1]], σ = Abs[p2[[1]] - p[[1]]]];

      (* Update standard deviation locator *)
      p2 = p[[1]] + σ, p[[2]] Exp[-1/2];

      (* Record previous mean: this is so you can tell which locator was most recently moved *)
      μ0 = p[[1]];

      (* Plot associated Gaussian-shaped curve *)
      Plot[p[[2]] Exp[-(x - p[[1]])^2/(2 σ^2)], x, -5, 5,
      PlotRange -> All, 0, 5],

      p, 0, 0.4, Locator,
      p2, 1, 0.4 Exp[-1/2], Locator,
      TrackedSymbols -> p, p2,
      Initialization :> (μ0 = 0; σ = 1)]


      Gaussian curve with locators






      share|improve this answer






















        up vote
        0
        down vote










        up vote
        0
        down vote









        This is an extended comment. (Well, two comments.)



        (1) @Silvia 's and @rherman 's code (and code from any other expert programmer) requires good starting values. That's just a fact of estimating curves.



        (2) Rather than using triplets of sliders, how about using pairs of Locator's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowded (i.e., without any triplets of sliders). Here's a crude example:



        Manipulate[
        (* If no change in the mean/height locator, then update the standard deviation *)
        If[μ0 == p[[1]], σ = Abs[p2[[1]] - p[[1]]]];

        (* Update standard deviation locator *)
        p2 = p[[1]] + σ, p[[2]] Exp[-1/2];

        (* Record previous mean: this is so you can tell which locator was most recently moved *)
        μ0 = p[[1]];

        (* Plot associated Gaussian-shaped curve *)
        Plot[p[[2]] Exp[-(x - p[[1]])^2/(2 σ^2)], x, -5, 5,
        PlotRange -> All, 0, 5],

        p, 0, 0.4, Locator,
        p2, 1, 0.4 Exp[-1/2], Locator,
        TrackedSymbols -> p, p2,
        Initialization :> (μ0 = 0; σ = 1)]


        Gaussian curve with locators






        share|improve this answer












        This is an extended comment. (Well, two comments.)



        (1) @Silvia 's and @rherman 's code (and code from any other expert programmer) requires good starting values. That's just a fact of estimating curves.



        (2) Rather than using triplets of sliders, how about using pairs of Locator's to define the individual Gaussian-shaped curves? A Locator at the peak of the curve could define the height and central value. A Locator on the "side" of the Gaussian curve could be restricted to move horizontally to vary the width. Sliders are good for when you have a "numerical" idea as to the values of the parameters. Here you want the user to set a "visual" idea as to the values of the parameters. This would also make the display less crowded (i.e., without any triplets of sliders). Here's a crude example:



        Manipulate[
        (* If no change in the mean/height locator, then update the standard deviation *)
        If[μ0 == p[[1]], σ = Abs[p2[[1]] - p[[1]]]];

        (* Update standard deviation locator *)
        p2 = p[[1]] + σ, p[[2]] Exp[-1/2];

        (* Record previous mean: this is so you can tell which locator was most recently moved *)
        μ0 = p[[1]];

        (* Plot associated Gaussian-shaped curve *)
        Plot[p[[2]] Exp[-(x - p[[1]])^2/(2 σ^2)], x, -5, 5,
        PlotRange -> All, 0, 5],

        p, 0, 0.4, Locator,
        p2, 1, 0.4 Exp[-1/2], Locator,
        TrackedSymbols -> p, p2,
        Initialization :> (μ0 = 0; σ = 1)]


        Gaussian curve with locators







        share|improve this answer












        share|improve this answer



        share|improve this answer










        answered Aug 21 at 22:56









        JimB

        15.2k12556




        15.2k12556



























             

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