Run command for every 10 folders unserialized
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i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
asked 36 mins ago
Relyativist
114
add a comment |Â
up vote
0
down vote
favorite
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
asked 36 mins ago
Relyativist
114
add a comment |Â
up vote
0
down vote
favorite
up vote
0
down vote
favorite
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
asked 36 mins ago
Relyativist
114
i have 100 folders: S001 S003 S004 S005 S006 ... S108
I need to run docker image for every folder for 10 folder simultaneously, so what i'm trying to do with code:
for d in /path/to/folder/S001..012; do num=$d##*S &&
docker run -it --cpuset-cpus="10-39" --rm -v /path/to/folder:/bids -v
/path/to/out:/out -v
/license.txt:/opt/freesurfer/license.txt --
entrypoint=/opt/freesurfer/bin/recon-all poldracklab/fmriprep:latest -i
/bids/S"$num"/anat/S"$num"_T1w.nii.gz -subjid P"$num" -sd
/out -all; done
It's working, but i want make this command unserialized, so command will run all 10 folder simultaneously. I think the mistake is in S001..012, it's not a correct way to implement all numbers, 1-12, since i have passed numbers.
bash for
bash for
asked 36 mins ago
Relyativist
114
asked 36 mins ago
Relyativist
114
asked 36 mins ago
Relyativist
114
asked 36 mins ago
Relyativist
114
asked 36 mins ago
Relyativist
114
114
add a comment |Â
add a comment |Â
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